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 reaction path


Transferable Learning of Reaction Pathways from Geometric Priors

Nam, Juno, Steiner, Miguel, Misterka, Max, Yang, Soojung, Singhal, Avni, Gómez-Bombarelli, Rafael

arXiv.org Artificial Intelligence

Identifying minimum-energy paths (MEPs) is crucial for understanding chemical reaction mechanisms but remains computationally demanding. We introduce MEPIN, a scalable machine-learning method for efficiently predicting MEPs from reactant and product configurations, without relying on transition-state geometries or pre-optimized reaction paths during training. The task is defined as predicting deviations from geometric interpolations along reaction coordinates. We address this task with a continuous reaction path model based on a symmetry-broken equivariant neural network that generates a flexible number of intermediate structures. The model is trained using an energy-based objective, with efficiency enhanced by incorporating geometric priors from geodesic interpolation as initial interpolations or pre-training objectives. Our approach generalizes across diverse chemical reactions and achieves accurate alignment with reference intrinsic reaction coordinates, as demonstrated on various small molecule reactions and [3+2] cycloadditions. Our method enables the exploration of large chemical reaction spaces with efficient, data-driven predictions of reaction pathways.


Generative Model for Constructing Reaction Path from Initial to Final States

Hayashi, Akihide, Takamoto, So, Li, Ju, Okanohara, Daisuke

arXiv.org Artificial Intelligence

Mapping out reaction pathways and their corresponding activation barriers is a significant aspect of molecular simulation. Given their inherent complexity and nonlinearity, even generating a initial guess of these paths remains a challenging problem. Presented in this paper is an innovative approach that utilizes neural networks to generate initial guess for these reaction pathways. The proposed method is initiated by inputting the coordinates of the initial state, followed by progressive alterations to its structure. This iterative process culminates in the generation of the approximate representation of the reaction path and the coordinates of the final state. The application of this method extends to complex reaction pathways illustrated by organic reactions. Training was executed on the Transition1x dataset, an organic reaction pathway dataset. The results revealed generation of reactions that bore substantial similarities with the corresponding test data. The method's flexibility allows for reactions to be generated either to conform to predetermined conditions or in a randomized manner.


Machine learning dramatically streamlines search for more efficient chemical reactions

#artificialintelligence

Even a simple chemical reaction can be surprisingly complicated. That's especially true for reactions involving catalysts, which speed up the chemistry that makes fuel, fertilizer and other industrial goods. In theory, a catalytic reaction may follow thousands of possible paths, and it can take years to identify which one it actually takes so scientists can tweak it and make it more efficient. Now researchers at the Department of Energy's SLAC National Accelerator Laboratory and Stanford University have taken a big step toward cutting through this thicket of possibilities. They used machine learning – a form of artificial intelligence – to prune away the least likely reaction paths, so they can concentrate their analysis on the few that remain and save a lot of time and effort.